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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82304193_82305253_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82304193 - 82305253
Intron Length:
1061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCTATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAGTTTTAAACT
Flanking Amino Acid:
LCRLMRYLKESEIQLREKEL
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.9
33.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.3
0.57
0.8
73.9
30
Minor 5ss
27.4
-2.6
2.7
31.6
42.2
Minor BPS
57.3
0.31
1.6
70.54
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015642
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020132
82295676 - 82314544
18869
ENSAPLT00000016311
82296594 - 82318711
22118
ENSAPLT00000036835
82296594 - 82316987
20394
ENSAPLT00000030014
82296594 - 82319019
22426