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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82307941_82309740_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82307941 - 82309740
Intron Length:
1800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGATCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TGTTCCTTTATT
Flanking Amino Acid:
SNQESSPLQNVFTTISQFTE
Intron Amino Acid Position:
557

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
0.9
73
31.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
84.4
0.77
0.8
80.5
31.5
Minor 5ss
35.3
-1.7
3.1
45.7
43.4
Minor BPS
75.7
0.89
1.5
89.03
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015642
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016311
82296594 - 82318711
22118
ENSAPLT00000036835
82296594 - 82316987
20394
ENSAPLT00000030014
82296594 - 82319019
22426
ENSAPLT00000020132
82295676 - 82314544
18869