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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82313467_82314490_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82313467 - 82314490
Intron Length:
1024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
TGACTTTCAACT
Flanking Amino Acid:
KLTPVSQRPKAEKQKEEGVS
Intron Amino Acid Position:
810

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.5
40.6
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
87.9
0.85
0.7
83.4
24.8
Minor 5ss
35.6
-1.6
3.2
47.4
48
Minor BPS
56.2
0.27
1.5
71.21
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015642
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036835
82296594 - 82316987
20394
ENSAPLT00000030014
82296594 - 82319019
22426
ENSAPLT00000020132
82295676 - 82314544
18869
ENSAPLT00000016311
82296594 - 82318711
22118