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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82314513_82316850_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82314513 - 82316850
Intron Length:
2338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTTCG
5'SS Class:
major
3'SS Sequence:
TCCTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
AACATTTTACTT
Flanking Amino Acid:
RPKAEKQKEEGVSRSSFFCL
Intron Amino Acid Position:
817

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.2
64.4
42.4
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
87.6
0.85
0.7
80.2
31.8
Minor 5ss
35.5
-1.6
2.9
42
44.7
Minor BPS
47.9
-0
1.6
59.06
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015642
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030014
82296594 - 82319019
22426
ENSAPLT00000016311
82296594 - 82318711
22118
ENSAPLT00000036835
82296594 - 82316987
20394