About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82325878_82325920_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
82325878 - 82325920
Intron Length:
43

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTG|GCGCTGGGC
5'SS Class:
weak_major
3'SS Sequence:
CTGTGCGCCCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTGCGAC
U12 Branch Point Sequence:
CGGGCTGCGACC
Flanking Amino Acid:
GVGQLPPRLRGAAVGRCQTC
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53
0.07
1.2
52.2
38.7
Major BPS
44.6
-0.3
1.3
39.2
40.8
Major PPT
52.5
0.06
1.1
48.6
39.6
Minor 5ss
12.9
-4.3
3.7
20.3
31.7
Minor BPS
38.1
-0.9
2.1
41.53
39.8

Associated Gene:

Gene:
TRIM45
Ensembl Gene ID:
ENSAPLG00000015615
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016271
82321373 - 82331958
10586