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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82325988_82327776_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82325988 - 82327776
Intron Length:
1789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCGC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CGTGCATAAATT
Flanking Amino Acid:
ALCPFCRQAHRRQKKTASHA
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
63.9
42.4
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
77.5
0.62
0.8
69.7
36.7
Minor 5ss
25.7
-2.8
3.1
32.8
42.2
Minor BPS
47.5
-0.1
2
65.31
45.5

Associated Gene:

Gene:
TRIM45
Ensembl Gene ID:
ENSAPLG00000015615
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016271
82321373 - 82331958
10586