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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82328511_82329102_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82328511 - 82329102
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGGG
5'SS Class:
major
3'SS Sequence:
CTCTGCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCTTTTGAATCC
Flanking Amino Acid:
DPAKCTLHGEDLCIARQNEL
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
60.6
44.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
79.4
0.66
0.8
72.7
32.1
Minor 5ss
28.7
-2.4
3.5
38.3
46.7
Minor BPS
41.7
-0.6
2.3
56.41
43.2

Associated Gene:

Gene:
TRIM45
Ensembl Gene ID:
ENSAPLG00000015615
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016271
82321373 - 82331958
10586