About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82329233_82331142_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82329233 - 82331142
Intron Length:
1910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGGGTATT
5'SS Class:
major
3'SS Sequence:
TGTCTGTTCGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTGAC
U12 Branch Point Sequence:
CAGTCAGTGACC
Flanking Amino Acid:
VTITHKDKKDCAVKPTVCDN
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
79.6
35.4
Major BPS
51.2
0.03
1.2
44.4
38.7
Major PPT
73.9
0.54
0.9
69
37
Minor 5ss
35
-1.7
3.2
47.2
42.9
Minor BPS
45.1
-0.4
2.3
55.41
43.1

Associated Gene:

Gene:
TRIM45
Ensembl Gene ID:
ENSAPLG00000015615
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016271
82321373 - 82331958
10586