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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82337854_82338604_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82337854 - 82338604
Intron Length:
751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGGAAT
U12 Branch Point Sequence:
TTAGCTGGAATT
Flanking Amino Acid:
IALIIGFGVSGKRSISVTAL
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
72.3
37.8
Major BPS
48.8
-0
1.5
59
44.6
Major PPT
85.5
0.8
0.7
81
24.1
Minor 5ss
39.1
-1.2
3.1
52.5
44.7
Minor BPS
46.9
-0.1
2.1
69.07
42.5

Associated Gene:

Gene:
VTCN1
Ensembl Gene ID:
ENSAPLG00000015540
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016192
82337796 - 82342560
4765