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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82340591_82342438_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82340591 - 82342438
Intron Length:
1848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCGCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TAGCCTCTCACT
Flanking Amino Acid:
AKATGDIKVTDFSITRGTNL
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
79.5
36.8
Major BPS
72.7
0.56
1
75
30.1
Major PPT
78.6
0.64
0.8
69.6
36.7
Minor 5ss
41.3
-1
3.7
63.6
48.1
Minor BPS
47.1
-0.1
2
67.23
43.3

Associated Gene:

Gene:
VTCN1
Ensembl Gene ID:
ENSAPLG00000015540
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016192
82337796 - 82342560
4765