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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82346241_82347400_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82346241 - 82347400
Intron Length:
1160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCAAA
5'SS Class:
major
3'SS Sequence:
CCTTCCCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTTAC
U12 Branch Point Sequence:
TGAGCTGTTACA
Flanking Amino Acid:
DRKPSKILQPAPLQLRNFRS
Intron Amino Acid Position:
1236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
0.9
72
34.7
Major BPS
59.1
0.23
1.2
52.7
42.9
Major PPT
80.8
0.69
0.7
77.4
24.6
Minor 5ss
33.4
-1.9
2.8
36.4
42
Minor BPS
43.8
-0.5
2.3
56.19
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015439
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036915
82345754 - 82357592
11839
ENSAPLT00000035345
82345754 - 82364065
18312
ENSAPLT00000016119
82345754 - 82364065
18312
ENSAPLT00000043582
82345754 - 82364156
18403