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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82348184_82348559_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82348184 - 82348559
Intron Length:
376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTCAAG
5'SS Class:
major
3'SS Sequence:
CATCCTTAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GCATCCTTAATT
Flanking Amino Acid:
CSLCSSIFKEGD*
Intron Amino Acid Position:
1114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
63.4
42.5
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
63.7
0.31
0.9
63.5
36.8
Minor 5ss
44.9
-0.5
2.6
57
47.4
Minor BPS
78
0.96
1.2
81.66
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015439
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048056
82348175 - 82364156
15982