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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82350589_82350868_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82350589 - 82350868
Intron Length:
280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGCGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCCCAATTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCAAT
U12 Branch Point Sequence:
TCTCTCCCAATT
Flanking Amino Acid:
TWLSSPAERQLAAKVMLTGM
Intron Amino Acid Position:
920

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
69.9
40.9
Major BPS
59.3
0.23
1.3
66.9
37.7
Major PPT
72.3
0.5
0.9
62.3
37.5
Minor 5ss
37.9
-1.4
3.6
56.7
47.5
Minor BPS
48.8
-0
1.9
70
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015439
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036915
82345754 - 82357592
11839
ENSAPLT00000035345
82345754 - 82364065
18312
ENSAPLT00000016119
82345754 - 82364065
18312
ENSAPLT00000048056
82348175 - 82364156
15982
ENSAPLT00000043582
82345754 - 82364156
18403