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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82351386_82351667_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82351386 - 82351667
Intron Length:
282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGGCGG
5'SS Class:
major
3'SS Sequence:
CGTCTCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TTTCCCTTTCTC
Flanking Amino Acid:
DGEEGVKQQEALLLFMGKSL
Intron Amino Acid Position:
842

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1
54.1
44.7
Major BPS
72.7
0.56
1
75
30.1
Major PPT
75.9
0.58
0.8
66
35.9
Minor 5ss
26.4
-2.7
3.1
29.7
37
Minor BPS
44.2
-0.4
3.6
72.1
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015439
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043582
82345754 - 82364156
18403
ENSAPLT00000036915
82345754 - 82357592
11839
ENSAPLT00000035345
82345754 - 82364065
18312
ENSAPLT00000016119
82345754 - 82364065
18312
ENSAPLT00000048056
82348175 - 82364156
15982