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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82352131_82352470_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82352131 - 82352470
Intron Length:
340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
TTTGTCATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AGGTATTTCATT
Flanking Amino Acid:
NPEYVREKKSSVYVQFYFED
Intron Amino Acid Position:
687

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84.9
0.79
0.8
82.2
34.1
Minor 5ss
28.6
-2.4
3
35.8
41
Minor BPS
47.5
-0.1
1.9
63.6
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015439
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036915
82345754 - 82357592
11839
ENSAPLT00000035345
82345754 - 82364065
18312
ENSAPLT00000016119
82345754 - 82364065
18312
ENSAPLT00000048056
82348175 - 82364156
15982
ENSAPLT00000043582
82345754 - 82364156
18403