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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82353578_82354810_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82353578 - 82354810
Intron Length:
1233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
GGACTACTAATG
Flanking Amino Acid:
LVILLETFEERFSCFFGHQQ
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.5
32.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
100
1.12
0.4
100
0
Minor 5ss
34.5
-1.8
3.4
46.2
49.1
Minor BPS
41.4
-0.7
1.8
41.39
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015439
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043582
82345754 - 82364156
18403
ENSAPLT00000036915
82345754 - 82357592
11839
ENSAPLT00000035345
82345754 - 82364065
18312
ENSAPLT00000016119
82345754 - 82364065
18312
ENSAPLT00000048056
82348175 - 82364156
15982