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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82355038_82355833_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82355038 - 82355833
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTTG
5'SS Class:
strong_major
3'SS Sequence:
GTCTGTCTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
CTATCTTAAATT
Flanking Amino Acid:
RGLRPGACVELIDVHLIQKP
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
72.8
39.1
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
76
0.58
0.9
72.8
37.5
Minor 5ss
39.7
-1.2
3.4
55
49.2
Minor BPS
62.5
0.47
1.7
75.99
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015439
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043582
82345754 - 82364156
18403
ENSAPLT00000036915
82345754 - 82357592
11839
ENSAPLT00000035345
82345754 - 82364065
18312
ENSAPLT00000016119
82345754 - 82364065
18312
ENSAPLT00000048056
82348175 - 82364156
15982