About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82360423_82361314_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82360423 - 82361314
Intron Length:
892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTCATCTCAAGG
Flanking Amino Acid:
KDNTGIIPCELLHFELEWLE
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
77.7
0.62
0.8
77.2
31.6
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
47.9
-0.3
1.9
55.63
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015439
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048056
82348175 - 82364156
15982
ENSAPLT00000043582
82345754 - 82364156
18403
ENSAPLT00000035345
82345754 - 82364065
18312
ENSAPLT00000016119
82345754 - 82364065
18312