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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82361562_82363874_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82361562 - 82363874
Intron Length:
2313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACGAGA
5'SS Class:
major
3'SS Sequence:
CATTTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCCTTTTCATT
Flanking Amino Acid:
AGRGVLPLGYSFISISDLKS
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.2
65.7
41.7
Major BPS
100
1.24
0.5
100
0
Major PPT
88.1
0.86
0.7
80.5
36.7
Minor 5ss
31.7
-2.1
3.1
40
45.7
Minor BPS
52.8
0.17
1.7
71.97
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015439
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048056
82348175 - 82364156
15982
ENSAPLT00000043582
82345754 - 82364156
18403
ENSAPLT00000035345
82345754 - 82364065
18312
ENSAPLT00000016119
82345754 - 82364065
18312