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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82365988_82373036_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82365988 - 82373036
Intron Length:
7049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTTTCTCACTC
Flanking Amino Acid:
AALPRSSLCTVILTFVCMLM
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
75.4
34.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
82.9
0.74
0.9
76.4
36.7
Minor 5ss
33.5
-1.9
3.1
42.4
44.3
Minor BPS
58.8
0.26
1.8
73.85
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015426
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016068
82365949 - 82377884
11936