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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82373652_82373770_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82373652 - 82373770
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTCAC
U12 Branch Point Sequence:
GAATAGTCACTT
Flanking Amino Acid:
KCYQCKQCRTELSQIVVTPC
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
67.1
0.43
1.2
69.3
37.7
Major PPT
88.9
0.88
0.6
88.5
21
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
37.5
-0.8
2.3
52.2
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015426
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016068
82365949 - 82377884
11936