About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82373915_82374940_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82373915 - 82374940
Intron Length:
1026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTACG
5'SS Class:
major
3'SS Sequence:
TTTTCCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGATTAT
U12 Branch Point Sequence:
CTGTCCAGATTA
Flanking Amino Acid:
SLCPNGIIANCSKNRNTICR
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
64.8
40.9
Major BPS
60.8
0.27
1.2
51.8
43.6
Major PPT
90
0.9
0.6
85.3
22
Minor 5ss
33.5
-1.9
2.7
44.8
42.5
Minor BPS
45.3
-0.3
1.9
56.9
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015426
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016068
82365949 - 82377884
11936