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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82375416_82375626_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82375416 - 82375626
Intron Length:
211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TCTTTTTGTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TCTCACTCATTT
Flanking Amino Acid:
VTTSPNSSGLNGNLVLGIIV
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
74.2
36.1
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
86.2
0.81
0.8
80.2
37.3
Minor 5ss
34.2
-1.8
2.8
40.4
39.1
Minor BPS
46.8
-0.1
1.9
66.75
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015426
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016068
82365949 - 82377884
11936