About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82377005_82377582_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82377005 - 82377582
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TCTCTTCTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GTTCTCACACTT
Flanking Amino Acid:
RPARKTQLPDNPAILYTVVD
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
71.7
33.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
83.7
0.76
0.7
76.5
32.2
Minor 5ss
34.2
-1.8
3.2
45.6
43.6
Minor BPS
43.3
-0.4
1.9
63.15
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015426
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016068
82365949 - 82377884
11936