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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82380724_82380800_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82380724 - 82380800
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGCG
5'SS Class:
major
3'SS Sequence:
TTGTTGCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGCCAT
U12 Branch Point Sequence:
GGTGCCGGAGCC
Flanking Amino Acid:
HVQTTLSGRVSLNFKDPEAV
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
63.4
41.5
Major BPS
49.9
-0
1.4
61.8
44.5
Major PPT
83
0.74
0.9
77.3
37
Minor 5ss
29.4
-2.4
3.5
38.7
46.6
Minor BPS
41.3
-0.6
2.3
52.92
44.1

Associated Gene:

Gene:
METTL16
Ensembl Gene ID:
ENSAPLG00000023741
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045771
82380596 - 82394348
13753