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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82383932_82384697_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82383932 - 82384697
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTATCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTGTTCTTATCC
Flanking Amino Acid:
PFFANQLEAKGVNSRNPRRP
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
38.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.2
0.7
0.9
73.8
40.8
Minor 5ss
43.2
-0.7
2.9
55
49.2
Minor BPS
69.9
0.6
1.6
77.62
38.6

Associated Gene:

Gene:
METTL16
Ensembl Gene ID:
ENSAPLG00000023741
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045771
82380596 - 82394348
13753