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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82385944_82388020_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82385944 - 82388020
Intron Length:
2077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTGCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTGATATGAAAT
Flanking Amino Acid:
PLKEELRIQGVPKVTHTEFC
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
75.5
0.57
0.9
72.4
37.8
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
47.6
-0.1
1.8
68.14
42

Associated Gene:

Gene:
METTL16
Ensembl Gene ID:
ENSAPLG00000023741
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045771
82380596 - 82394348
13753