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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82389177_82389269_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82389177 - 82389269
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
ATAATATGAACT
Flanking Amino Acid:
WVEKILADLKVQHKRVPCGK
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
66.7
0.41
1
57.8
39
Major PPT
69.7
0.44
0.9
66.2
34.6
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
50.1
0.08
1.7
70.47
39.5

Associated Gene:

Gene:
METTL16
Ensembl Gene ID:
ENSAPLG00000023741
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045771
82380596 - 82394348
13753