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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82395859_82400367_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82395859 - 82400367
Intron Length:
4509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAATGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TTCTCTTTATAG
Flanking Amino Acid:
LIEENQMDSLGVVVVDELHM
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
36.6
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
84.6
0.78
0.7
80
25.6
Minor 5ss
37.6
-1.4
3.2
50.9
45.7
Minor BPS
57.1
0.09
1.8
64.12
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014869
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015507
82395586 - 82462917
67332