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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82400477_82402717_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82400477 - 82402717
Intron Length:
2241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TAACCACTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTCTTTTAACC
Flanking Amino Acid:
VRYVTEKAAKRRTKTTGHGF
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
68.8
38
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
69.9
0.45
1
59.3
41.4
Minor 5ss
27.1
-2.6
3
31.8
42.6
Minor BPS
78.2
0.86
1.1
83.25
29.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014869
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015507
82395586 - 82462917
67332