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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82406228_82409432_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82406228 - 82409432
Intron Length:
3205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCAGA
5'SS Class:
major
3'SS Sequence:
TTTCCCTGTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCTTCTTTCATT
Flanking Amino Acid:
RAGRKGVDTEGESILVCKPS
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
68.9
43.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
77
0.61
0.8
72.7
32.1
Minor 5ss
38.3
-1.3
2.8
40.4
45.5
Minor BPS
67.7
0.64
1.7
82.98
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014869
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015507
82395586 - 82462917
67332