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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82409576_82411029_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82409576 - 82411029
Intron Length:
1454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGGAC
5'SS Class:
major
3'SS Sequence:
CTTTCTTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTCAC
U12 Branch Point Sequence:
CTTTCTTCAACA
Flanking Amino Acid:
TSSMKRAILEIIVGGVANTP
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
60.4
38.7
Major BPS
58.3
0.21
1.1
61.1
36.4
Major PPT
80.8
0.69
0.8
77.3
30
Minor 5ss
28.5
-2.5
3.6
40.8
45.8
Minor BPS
71.7
0.68
1.5
79.34
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014869
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015507
82395586 - 82462917
67332