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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82411235_82412124_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82411235 - 82412124
Intron Length:
890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCACA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTTTTAACA
Flanking Amino Acid:
QVLDSGDDEKAKVYHPTHLG
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
73.5
37.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.4
0.77
0.9
81.3
34.8
Minor 5ss
39.7
-1.2
2.8
50.3
45.6
Minor BPS
81.2
0.98
1
83.95
29.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014869
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015507
82395586 - 82462917
67332