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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82414693_82415015_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82414693 - 82415015
Intron Length:
323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCCACA
5'SS Class:
major
3'SS Sequence:
TTTTTGCCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATTATTATATTT
Flanking Amino Acid:
KQHRQMAIHKRFFTSLALLD
Intron Amino Acid Position:
546

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.3
62.5
43.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
82
0.72
0.8
74.6
36.4
Minor 5ss
43.8
-0.7
3
58.4
45.9
Minor BPS
46.9
-0.1
1.8
67.29
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014869
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015507
82395586 - 82462917
67332