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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82422006_82422587_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82422006 - 82422587
Intron Length:
582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TTTGCTTGTATT
Flanking Amino Acid:
ISLQQMQDQNEISLSLAPPP
Intron Amino Acid Position:
1772

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.2
35.9
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
78.3
0.64
0.8
77.7
31.1
Minor 5ss
26.7
-2.7
3
27.9
37.8
Minor BPS
51.8
0.14
1.9
76.12
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014869
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015507
82395586 - 82462917
67332