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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82422779_82424245_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82422779 - 82424245
Intron Length:
1467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGCAGG
5'SS Class:
major
3'SS Sequence:
CTCTCTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TCTCTTTTCAAG
Flanking Amino Acid:
SLEGSFEDPKVACWLLDSGS
Intron Amino Acid Position:
1836

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.3
55.7
48.6
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
75.7
0.58
1
74.4
34.1
Minor 5ss
33.7
-1.9
3
40.4
45.4
Minor BPS
46.2
-0.4
1.9
52.95
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014869
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015507
82395586 - 82462917
67332