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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82429015_82429479_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82429015 - 82429479
Intron Length:
465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATTAT
U12 Branch Point Sequence:
GGAGTCTCAATT
Flanking Amino Acid:
YPVSQTHTATGRVTFTEPNI
Intron Amino Acid Position:
2085

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.3
32.6
Major BPS
64.6
0.36
1.1
55.7
39.9
Major PPT
85.7
0.8
0.7
84.2
23.7
Minor 5ss
30.9
-2.2
3.2
39
46.4
Minor BPS
49.4
0.03
1.6
62.3
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014869
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015507
82395586 - 82462917
67332