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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82429607_82431429_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82429607 - 82431429
Intron Length:
1823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGAGG
5'SS Class:
major
3'SS Sequence:
TTTGTCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTGTCTCCACA
Flanking Amino Acid:
AVYSRAVCGSRGRRHSSMLP
Intron Amino Acid Position:
2127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
64.3
47.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82
0.72
0.8
76.7
32.1
Minor 5ss
30.3
-2.3
3.3
39.2
46.3
Minor BPS
50.3
0
2.1
70.77
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014869
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015507
82395586 - 82462917
67332