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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82472126_82473193_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82472126 - 82473193
Intron Length:
1068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
GCCATTTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TGTTTTATATCC
Flanking Amino Acid:
AEAFSKHAHEVMLKYKDKKW
Intron Amino Acid Position:
1151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
71
0.47
0.9
65.3
36.1
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
50.7
0
1.8
67.41
38.2

Associated Gene:

Gene:
STXBP5L
Ensembl Gene ID:
ENSAPLG00000014395
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015038
82472084 - 82663824
191741