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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82473415_82473785_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82473415 - 82473785
Intron Length:
371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
TTCTCCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CATTCCCTATTT
Flanking Amino Acid:
SGQAFDREELFGEATAGKAS
Intron Amino Acid Position:
1077

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
69.1
35.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
89
0.88
0.6
84.2
23.6
Minor 5ss
35.9
-1.6
3.3
53.4
43.8
Minor BPS
53.9
0.2
2
73.79
43.2

Associated Gene:

Gene:
STXBP5L
Ensembl Gene ID:
ENSAPLG00000014395
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015038
82472084 - 82663824
191741