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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82473898_82476259_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82473898 - 82476259
Intron Length:
2362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCCC
5'SS Class:
major
3'SS Sequence:
ACTTACTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTGCCTGACTT
Flanking Amino Acid:
YSQEMCDNLQDMLGDLFTPV
Intron Amino Acid Position:
1040

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
63.1
41.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.2
0.57
0.9
66.4
39.8
Minor 5ss
38.1
-1.3
3.2
51.2
45.5
Minor BPS
58.8
0.35
1.9
80.5
41.8

Associated Gene:

Gene:
STXBP5L
Ensembl Gene ID:
ENSAPLG00000014395
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015038
82472084 - 82663824
191741