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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82476426_82477400_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82476426 - 82477400
Intron Length:
975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTATC
5'SS Class:
major
3'SS Sequence:
TGTTTCTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAC
U12 Branch Point Sequence:
TTTGTCTAACCT
Flanking Amino Acid:
FCANGHIMTLSLPSLRPLLD
Intron Amino Acid Position:
984

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
78.3
36.2
Major BPS
66.8
0.42
1.2
69.6
35.5
Major PPT
87.6
0.85
0.7
85.4
29.3
Minor 5ss
39.3
-1.2
3
54.6
42.6
Minor BPS
53.6
0.19
2
78.66
44.1

Associated Gene:

Gene:
STXBP5L
Ensembl Gene ID:
ENSAPLG00000014395
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015038
82472084 - 82663824
191741