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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82477762_82478729_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82477762 - 82478729
Intron Length:
968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTATATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTATAT
U12 Branch Point Sequence:
AGACGCTTATAT
Flanking Amino Acid:
QSEPVMVSPSGTVLTLKGAV
Intron Amino Acid Position:
864

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
71.6
38.4
Major BPS
66.9
0.42
1.1
64.7
41.3
Major PPT
86
0.81
0.8
81
36
Minor 5ss
34.2
-1.8
3.5
44.2
44.6
Minor BPS
44.5
-0.3
2
59.3
43.1

Associated Gene:

Gene:
STXBP5L
Ensembl Gene ID:
ENSAPLG00000014395
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015038
82472084 - 82663824
191741