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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82478970_82492409_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82478970 - 82492409
Intron Length:
13440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTATTTATTT
Flanking Amino Acid:
MEISLPVTTEENRENSFSRS
Intron Amino Acid Position:
784

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
67.2
38.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.4
0.77
0.9
80.7
36.7
Minor 5ss
26.2
-2.7
3.2
34.3
42
Minor BPS
57.6
0.32
1.8
76.35
41

Associated Gene:

Gene:
STXBP5L
Ensembl Gene ID:
ENSAPLG00000014395
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015038
82472084 - 82663824
191741