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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82512660_82522977_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82512660 - 82522977
Intron Length:
10318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TCCATTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGTAACTTAACT
Flanking Amino Acid:
SPRKSKQFAAGLTELSDSPV
Intron Amino Acid Position:
705

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.5
40.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
85.6
0.8
0.8
83.7
31.2
Minor 5ss
33.8
-1.8
3.3
49
46.8
Minor BPS
73.5
0.81
1.5
87.23
37.5

Associated Gene:

Gene:
STXBP5L
Ensembl Gene ID:
ENSAPLG00000014395
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015038
82472084 - 82663824
191741