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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82523130_82526227_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82523130 - 82526227
Intron Length:
3098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TTATTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AAATATTTATTT
Flanking Amino Acid:
TSLAVNSAYGLVAFGNCNGL
Intron Amino Acid Position:
654

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
80.4
34
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89
0.88
0.7
89.1
27.6
Minor 5ss
40.3
-1.1
2.9
61.3
43
Minor BPS
49.6
0.05
1.7
65.44
39.1

Associated Gene:

Gene:
STXBP5L
Ensembl Gene ID:
ENSAPLG00000014395
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015038
82472084 - 82663824
191741