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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82530797_82534732_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82530797 - 82534732
Intron Length:
3936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTCAT
5'SS Class:
major
3'SS Sequence:
TTATTTATTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTATTAAAT
Flanking Amino Acid:
SKHEVNTEIASLEVRLQYEV
Intron Amino Acid Position:
555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
72
39.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.9
0.58
1.1
80.6
35.8
Minor 5ss
38.1
-1.3
3.1
55.9
42.3
Minor BPS
65.3
0.56
1.7
82.05
39.1

Associated Gene:

Gene:
STXBP5L
Ensembl Gene ID:
ENSAPLG00000014395
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015038
82472084 - 82663824
191741