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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82537012_82538240_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82537012 - 82538240
Intron Length:
1229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGAATG
5'SS Class:
major
3'SS Sequence:
ATATTTTTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTGTTTTAACA
Flanking Amino Acid:
AQTYPEIIITGHADGSVKFW
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
71.5
40.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.5
0.57
1.1
79.9
37
Minor 5ss
31.2
-2.1
3
32.3
42
Minor BPS
68.8
0.59
1.4
73.92
38.7

Associated Gene:

Gene:
STXBP5L
Ensembl Gene ID:
ENSAPLG00000014395
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015038
82472084 - 82663824
191741