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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82541357_82542554_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82541357 - 82542554
Intron Length:
1198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTTCATATTT
Flanking Amino Acid:
LTLCETPYPNEFQEPYAVVV
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.2
0.88
0.6
83.8
24.5
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
54.7
0.23
1.9
76
41.3

Associated Gene:

Gene:
STXBP5L
Ensembl Gene ID:
ENSAPLG00000014395
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015038
82472084 - 82663824
191741