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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82542710_82542881_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82542710 - 82542881
Intron Length:
172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
ATATTTGATATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATATTTGATA
Flanking Amino Acid:
LKVEYKTCKNSEPFVIFSGG
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
67.8
0.4
1
62.6
42.8
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
62.2
0.38
1.4
71.62
34.1

Associated Gene:

Gene:
STXBP5L
Ensembl Gene ID:
ENSAPLG00000014395
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015038
82472084 - 82663824
191741